PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0087s0083.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family E2F/DP
Protein Properties Length: 413aa    MW: 45586.8 Da    PI: 4.5881
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0087s0083.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP86.12.6e-2783148171
              E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                          r+++sL+llt+kf++l++++e+g+++ln++a++L   +v  ++RRiYDi+NVLe+++liekk kn+irwkg
  Kaladp0087s0083.2.p  83 RYDSSLGLLTKKFINLIKHAEDGMLDLNKAAETL---EV--QKRRIYDITNVLEGIGLIEKKLKNRIRWKG 148
                          6899******************************...99..****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.1E-2980150IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.5E-1783146IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.8E-3483148IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.2E-2485148IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF1440743.4E-33161265No hitNo description
CDDcd146601.15E-48161265No hitNo description
PfamPF164211.5E-33164263IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010090Biological Processtrichome morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051302Biological Processregulation of cell division
GO:0051446Biological Processpositive regulation of meiotic cell cycle
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MICKSLQLKR KSMADDNEVA SSNWTNSTVY TEVDKSPLKK PVSAKGGRVY NKSKGSKGNK  60
AAAQTPLLTA GSPSALTSAG NCRYDSSLGL LTKKFINLIK HAEDGMLDLN KAAETLEVQK  120
RRIYDITNVL EGIGLIEKKL KNRIRWKGLD VSQPDGVETD VSRLQIDVEN LNLEEQNLDD  180
QIRGMQERLR DLSEDENNQK WLFVTEEDIK SLPCFQNETL IAIKAPHGTT LEVPDPDEAA  240
NFPQRRYRIV LRSTMGPIDV YLVSQFEEKF EDLNGAEQSV NCPVASTSRP VENSGTRVAN  300
AQSTENDITG QAQDAHRVPS DTLMNDNGSD DFVGGIMKIV PDVNADTDYW FLSDAELSVT  360
ELWHPESGIG NHLDDMPHHT DYDIGDTSIP QPQTPPSALM DIPSSSVNST PR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A7e-2483149774PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010654143.10.0PREDICTED: transcription factor E2FA isoform X2
SwissprotQ9FNY01e-144E2FA_ARATH; Transcription factor E2FA
TrEMBLD7TH520.0D7TH52_VITVI; Putative uncharacterized protein
STRINGVIT_08s0007g02510.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36010.11e-140E2F transcription factor 3